A160T Summary

KCNH2 A160T was found in 0 papers (see below) with a total of 0 carriers: 0 had LQT2. A160T is not present in gnomAD. A160T has been functionally characterized in 0 papers. This residue is located in a Mild_Hotspot region for LQT2.

In silico predictions, functional data (if available), and location in structure are equivalent to observing 8 individuals unaffected with LQT2 and 2 individuals affected with LQT2.


A160T Reported Clinical Data

PMID Year Carriers Unaffected LQT2 Other disease
Summary totals might not agree with the literature table because of duplicate patients, which were excluded from the total counts.

A160T Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

PAM Score REVEL Score PROVEAN Score Polyphen2 Score BLAST-PSSM
NA 0.404 -0.617 0.164 -1

A160T has 30 neighbors (found in individuals) within 15 ångströms

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms. NOTE: some residues appear multiple times at different distances. This results from the fact that the functional Kv11.1 channel is a homotetramer and occasionally the same residue from multiple subunits is present within the 15A window. All variants shown in the rightmost column have been observed in at least one individual in the literature or gnomAD.

ResidueNumber Distance(Å) Variants
145 14.7
146 14.2 N146X
147 13.7 H147R H147X
148 13.2 R148fsX R148Q R148W R148Y
149 12.6 G149A G149V
150 12 P150L
151 11.4 P151fsX P151X
152 10.7 T152fsX T152I T152S T152X
153 10.1 S153R
154 9.3 W154R W154X
155 8.5
156 7.6
157 6.6 P157X
158 5.4
159 3.8
161 3.8
162 5.4 T162X
163 6.6
164 7.6 R164C R164H
165 8.5
166 9.3
167 10.1
168 10.7
169 11.4 A169G
170 12 L170Ins
171 12.6 L171Ins
172 13.2 A172V
173 13.7
174 14.2
175 14.7 A175D A175S A175X