A233G Summary

KCNH2 A233G was found in 0 papers (see below) with a total of 0 carriers: 0 had LQT2. A233G is not present in gnomAD. A233G has been functionally characterized in 0 papers. This residue is located in a Mild_Hotspot region for LQT2.

In silico predictions, functional data (if available), and location in structure are equivalent to observing 9 individuals unaffected with LQT2 and 1 individuals affected with LQT2.


A233G Reported Clinical Data

PMID Year Carriers Unaffected LQT2 Other disease
Summary totals might not agree with the literature table because of duplicate patients, which were excluded from the total counts.

A233G Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

PAM Score REVEL Score PROVEAN Score Polyphen2 Score BLAST-PSSM
NA 0.359 -1.604 0.025 -1

A233G has 30 neighbors (found in individuals) within 15 ångströms

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms. NOTE: some residues appear multiple times at different distances. This results from the fact that the functional Kv11.1 channel is a homotetramer and occasionally the same residue from multiple subunits is present within the 15A window. All variants shown in the rightmost column have been observed in at least one individual in the literature or gnomAD.

ResidueNumber Distance(Å) Variants
218 14.7
219 14.2 D219V
220 13.7
221 13.2
222 12.6 V222L
223 12
224 11.4
225 10.7
226 10.1
227 9.3
228 8.5 A228P A228T A228V A228X
229 7.6 E229X
230 6.6 E230D
231 5.4
232 3.8 R232C R232P
234 3.8 L234Del
235 5.4
236 6.6 G236V
237 7.6
238 8.5 G238D G238R G238S
239 9.3 S239P S239X
240 10.1 P240L
241 10.7 P241fsX P241L P241S
242 11.4 R242C R242X
243 12 S243R S243X
244 12.6 A244E A244G
245 13.2 P245R
246 13.7
247 14.2 Q247R Q247X
248 14.7