G965E Summary

KCNH2 G965E was found in 0 papers (see below) with a total of 0 carriers: 0 had LQT2. G965E is not present in gnomAD. G965E has been functionally characterized in 0 papers. This residue is located in a Non_Hotspot region for LQT2.

In silico predictions, functional data (if available), and location in structure are equivalent to observing 9 individuals unaffected with LQT2 and 1 individuals affected with LQT2.

G965E Reported Clinical Data

PMID Year Carriers Unaffected LQT2 Other disease
Summary totals might not agree with the literature table because of duplicate patients, which were excluded from the total counts.

G965E Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

PAM Score REVEL Score PROVEAN Score Polyphen2 Score BLAST-PSSM
NA 0.487 -0.511 0.041 0

G965E has 30 neighbors (found in individuals) within 15 ångströms

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms. NOTE: some residues appear multiple times at different distances. This results from the fact that the functional Kv11.1 channel is a homotetramer and occasionally the same residue from multiple subunits is present within the 15A window. All variants shown in the rightmost column have been observed in at least one individual in the literature or gnomAD.

ResidueNumber Distance(Å) Variants
950 14.7
951 14.2
952 13.7 P952S P952T
953 13.2
954 12.6 R954C R954H
955 12 L955V
956 11.4
957 10.7
958 10.1 F958L
959 9.3
960 8.5 S960N
961 7.6 P961X
962 6.6
963 5.4 P963T
964 3.8
966 3.8 E966A E966K
967 5.4 P967L P967X S967X
968 6.6 P968A P968fsX P968L
969 7.6 G969D G969X
970 8.5 G970A
971 9.3
972 10.1 P972H P972S
973 10.7 L973X
974 11.4 M974L
975 12
976 12.6
977 13.2 C977F C977S C977W C977Y
978 13.7 E978K E978X
979 14.2 K979R
980 14.7