A1428D Summary
SCN5A A1428D was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. A1428D is not present in gnomAD. A1428D has been functionally characterized in 0 papers. Other variants at the same resdue are A1428D .A1428G .A1428P .A1428S .A1428T .A1428V .
This residue is located in a Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.
A1428D Predictions
PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.
| SIFT |
Sift Score |
PROVEAN Score |
Polyphen2 |
Polyphen2 Score |
eaRate |
blastPssm |
pamScore |
REVEL |
| NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
0.958 |
A1428D has 66 neighbors within 15 ångströms that have been found in individuals.
A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.
| ResidueNumber |
Distance(Å) |
Variants |
| 878 |
11.5 |
R878C R878H |
| 879 |
12.2 |
W879R W879R |
| 885 |
14.4 |
|
| 886 |
13.8 |
H886P H886Q H886Q |
| 889 |
12.8 |
|
| 1348 |
14.6 |
|
| 1349 |
14.2 |
|
| 1351 |
13.3 |
|
| 1352 |
10.3 |
|
| 1353 |
12.9 |
V1353M |
| 1354 |
14 |
|
| 1355 |
8.8 |
|
| 1356 |
5.9 |
|
| 1357 |
10.5 |
A1357V |
| 1358 |
10.7 |
|
| 1359 |
7 |
|
| 1360 |
6 |
|
| 1361 |
10.3 |
|
| 1362 |
10.1 |
|
| 1380 |
14.7 |
N1380K N1380K p.N1380del |
| 1397 |
12.9 |
|
| 1398 |
10.1 |
V1398M |
| 1399 |
14.7 |
|
| 1400 |
10.5 |
|
| 1401 |
10.4 |
|
| 1402 |
8.6 |
|
| 1403 |
12.5 |
|
| 1407 |
14.1 |
|
| 1408 |
12.5 |
G1408R G1408R |
| 1411 |
11.3 |
|
| 1412 |
12.2 |
|
| 1414 |
14.1 |
|
| 1415 |
11.7 |
|
| 1420 |
12.1 |
G1420R G1420V |
| 1421 |
11.5 |
|
| 1422 |
10.4 |
|
| 1423 |
9.5 |
|
| 1424 |
6.6 |
|
| 1425 |
5.9 |
|
| 1426 |
6.8 |
|
| 1427 |
3.6 |
|
| 1429 |
3.9 |
|
| 1430 |
5.4 |
D1430N |
| 1431 |
4.9 |
|
| 1432 |
10.6 |
R1432S R1432S |
| 1433 |
9.8 |
G1433W |
| 1434 |
11.5 |
|
| 1436 |
13.7 |
|
| 1437 |
12.5 |
|
| 1438 |
9 |
|
| 1439 |
11.1 |
|
| 1440 |
11 |
|
| 1441 |
12.5 |
|
| 1442 |
11.4 |
|
| 1443 |
8.4 |
N1443S |
| 1444 |
9.3 |
|
| 1445 |
10.7 |
Y1445H |
| 1446 |
8.1 |
|
| 1447 |
10.3 |
|
| 1448 |
11.9 |
I1448L |
| 1449 |
9.3 |
Y1449C |
| 1450 |
8.2 |
|
| 1451 |
13.3 |
|
| 1452 |
14.6 |
|
| 1453 |
13.4 |
|
| 1454 |
14.7 |
|