C1004G Summary
SCN5A C1004G was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. C1004G is not present in gnomAD. C1004G has been functionally characterized in 0 papers. Other variants at the same resdue are C1004F .C1004G .C1004R .C1004S .C1004S .C1004W .C1004Y .
This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.
C1004G Predictions
PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.
SIFT |
Sift Score |
PROVEAN Score |
Polyphen2 |
Polyphen2 Score |
eaRate |
blastPssm |
pamScore |
REVEL |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
0.716 |
C1004G has 30 neighbors within 15 ångströms that have been found in individuals.
A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.
ResidueNumber |
Distance(Å) |
Variants |
989 |
14.7 |
|
990 |
14.2 |
|
991 |
13.7 |
|
992 |
13.2 |
|
993 |
12.6 |
A993T |
994 |
12 |
|
995 |
11.4 |
L995F |
996 |
10.7 |
|
997 |
10.1 |
A997D A997S A997T |
998 |
9.3 |
|
999 |
8.5 |
|
1000 |
7.6 |
p.Gln1000del |
1001 |
6.6 |
|
1002 |
5.4 |
P1002S |
1003 |
3.8 |
|
1005 |
3.8 |
|
1006 |
5.4 |
|
1007 |
6.6 |
|
1008 |
7.6 |
P1008S |
1009 |
8.5 |
|
1010 |
9.3 |
|
1011 |
10.1 |
P1011L P1011S |
1012 |
10.7 |
|
1013 |
11.4 |
|
1014 |
12 |
P1014S |
1015 |
12.6 |
|
1016 |
13.2 |
T1016M |
1017 |
13.7 |
|
1018 |
14.2 |
|
1019 |
14.7 |
|