C489W Summary
SCN5A C489W was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. C489W is not present in gnomAD. C489W has been functionally characterized in 0 papers. Other variants at the same resdue are C489F .C489G .C489R .C489S .C489S .C489W .C489Y .
This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.
C489W Predictions
PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.
SIFT |
Sift Score |
PROVEAN Score |
Polyphen2 |
Polyphen2 Score |
eaRate |
blastPssm |
pamScore |
REVEL |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
0.293 |
C489W has 30 neighbors within 15 ångströms that have been found in individuals.
A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.
ResidueNumber |
Distance(Å) |
Variants |
474 |
14.7 |
R474K |
475 |
14.2 |
R475K R475S R475S |
476 |
13.7 |
|
477 |
13.2 |
|
478 |
12.6 |
|
479 |
12 |
|
480 |
11.4 |
K480N K480N |
481 |
10.7 |
R481Q R481W |
482 |
10.1 |
|
483 |
9.3 |
|
484 |
8.5 |
|
485 |
7.6 |
|
486 |
6.6 |
|
487 |
5.4 |
|
488 |
3.8 |
|
490 |
3.8 |
|
491 |
5.4 |
|
492 |
6.6 |
|
493 |
7.6 |
R493K |
494 |
8.5 |
|
495 |
9.3 |
|
496 |
10.1 |
|
497 |
10.7 |
|
498 |
11.4 |
|
499 |
12 |
|
500 |
12.6 |
|
501 |
13.2 |
|
502 |
13.7 |
|
503 |
14.2 |
|
504 |
14.7 |
R504T |