D1062A Summary

SCN5A D1062A was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. D1062A is not present in gnomAD. D1062A has been functionally characterized in 0 papers. Other variants at the same resdue are D1062A .D1062E .D1062E .D1062G .D1062H .D1062N .D1062V .D1062Y . This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.

D1062A Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

SIFT Sift Score PROVEAN Score Polyphen2 Polyphen2 Score eaRate blastPssm pamScore REVEL
NA NA NA NA NA NA NA NA 0.528

D1062A has 30 neighbors within 15 ångströms that have been found in individuals.

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.

ResidueNumber Distance(Å) Variants
1047 14.7
1048 14.2
1049 13.7
1050 13.2 A1050T
1051 12.6
1052 12
1053 11.4 E1053K
1054 10.7
1055 10.1
1056 9.3
1057 8.5
1058 7.6
1059 6.6
1060 5.4
1061 3.8 E1061D E1061D
1063 3.8
1064 5.4 p.E1064del
1065 6.6
1066 7.6 S1066G
1067 8.5
1068 9.3 G1068D
1069 10.1 T1069M
1070 10.7
1071 11.4 E1071K
1072 12 p.E1072del
1073 12.6
1074 13.2
1075 13.7
1076 14.2
1077 14.7