E1025A Summary
SCN5A E1025A was found in 0 papers (see below) with a total of 1 carrier: 0 had BrS1, 0 had LQT3, and 0 had other disease. E1025A is present in 1 out of 248116 alleles in gnomAD (minor allele frequency of 0.000403%). E1025A has been functionally characterized in 0 papers. Other variants at the same resdue are E1025A .E1025D .E1025D .E1025G .E1025K .E1025Q .E1025V .
This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.
E1025A Predictions
PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.
SIFT |
Sift Score |
PROVEAN Score |
Polyphen2 |
Polyphen2 Score |
eaRate |
blastPssm |
pamScore |
REVEL |
Tolerated |
0.418 |
-0.94 |
benign |
0.061 |
3.75 |
-1.45 |
-2 |
0.414 |
E1025A has 30 neighbors within 15 ångströms that have been found in individuals.
A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.
ResidueNumber |
Distance(Å) |
Variants |
1010 |
14.7 |
|
1011 |
14.2 |
P1011L P1011S |
1012 |
13.7 |
|
1013 |
13.2 |
|
1014 |
12.6 |
P1014S |
1015 |
12 |
|
1016 |
11.4 |
T1016M |
1017 |
10.7 |
|
1018 |
10.1 |
|
1019 |
9.3 |
|
1020 |
8.5 |
|
1021 |
7.6 |
P1021S |
1022 |
6.6 |
|
1023 |
5.4 |
R1023C R1023H R1023P |
1024 |
3.8 |
|
1026 |
3.8 |
|
1027 |
5.4 |
R1027Q |
1028 |
6.6 |
|
1029 |
7.6 |
|
1030 |
8.5 |
|
1031 |
9.3 |
|
1032 |
10.1 |
E1032K |
1033 |
10.7 |
Q1033R |
1034 |
11.4 |
|
1035 |
12 |
|
1036 |
12.6 |
|
1037 |
13.2 |
|
1038 |
13.7 |
|
1039 |
14.2 |
|
1040 |
14.7 |
G1040R G1040R |