E1133A Summary
SCN5A E1133A was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. E1133A is not present in gnomAD. E1133A has been functionally characterized in 0 papers. Other variants at the same resdue are E1133A .E1133D .E1133D .E1133G .E1133K .E1133Q .E1133V .
This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.
E1133A Predictions
PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.
SIFT |
Sift Score |
PROVEAN Score |
Polyphen2 |
Polyphen2 Score |
eaRate |
blastPssm |
pamScore |
REVEL |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
0.464 |
E1133A has 30 neighbors within 15 ångströms that have been found in individuals.
A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.
ResidueNumber |
Distance(Å) |
Variants |
1118 |
14.7 |
|
1119 |
14.2 |
|
1120 |
13.7 |
|
1121 |
13.2 |
A1121V |
1122 |
12.6 |
|
1123 |
12 |
|
1124 |
11.4 |
|
1125 |
10.7 |
A1125G A1125V |
1126 |
10.1 |
|
1127 |
9.3 |
|
1128 |
8.5 |
|
1129 |
7.6 |
G1129S |
1130 |
6.6 |
|
1131 |
5.4 |
T1131I |
1132 |
3.8 |
|
1134 |
3.8 |
|
1135 |
5.4 |
S1135I |
1136 |
6.6 |
|
1137 |
7.6 |
|
1138 |
8.5 |
|
1139 |
9.3 |
|
1140 |
10.1 |
|
1141 |
10.7 |
|
1142 |
11.4 |
|
1143 |
12 |
|
1144 |
12.6 |
|
1145 |
13.2 |
|
1146 |
13.7 |
|
1147 |
14.2 |
T1147N T1147S T1147S |
1148 |
14.7 |
A1148T |