L461M Summary

SCN5A L461M was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. L461M is not present in gnomAD. L461M has been functionally characterized in 0 papers. Other variants at the same resdue are L461F .L461F .L461M .L461S .L461V .L461W . This residue is located in a Non_Hotspot region for BrS1 and in a Mild_Hotspot region for Long QT syndrome.

L461M Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

SIFT Sift Score PROVEAN Score Polyphen2 Polyphen2 Score eaRate blastPssm pamScore REVEL
NA NA NA NA NA NA NA NA 0.341

L461M has 30 neighbors within 15 ångströms that have been found in individuals.

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.

ResidueNumber Distance(Å) Variants
446 14.7 E446K
447 14.2 A447G
448 13.7
449 13.2 T449A
450 12.6
451 12
452 11.4
453 10.7 V453M
454 10.1
455 9.3
456 8.5 V456M
457 7.6
458 6.6 R458C R458H
459 5.4
460 3.8
462 3.8 E462K
463 5.4 M463R
464 6.6
465 7.6
466 8.5 L466F L466F
467 9.3
468 10.1 P468L
469 10.7
470 11.4 N470K N470K
471 12
472 12.6
473 13.2
474 13.7 R474K
475 14.2 R475K R475S R475S
476 14.7