P628S Summary

SCN5A P628S was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. P628S is not present in gnomAD. P628S has been functionally characterized in 0 papers. Other variants at the same resdue are P628A .P628L .P628Q .P628R .P628S .P628T . This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.

P628S Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

SIFT Sift Score PROVEAN Score Polyphen2 Polyphen2 Score eaRate blastPssm pamScore REVEL
NA NA NA NA NA NA NA NA 0.484

P628S has 30 neighbors within 15 ångströms that have been found in individuals.

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.

ResidueNumber Distance(Å) Variants
613 14.7
614 14.2
615 13.7 G615E
616 13.2
617 12.6
618 12 L618F
619 11.4 L619F
620 10.7 R620C R620H
621 10.1
622 9.3
623 8.5
624 7.6 L624Q
625 6.6 E625D E625D
626 5.4
627 3.8 P627L
629 3.8
630 5.4 T630M
631 6.6
632 7.6 T632M
633 8.5
634 9.3 S634L
635 10.1
636 10.7
637 11.4
638 12
639 12.6 G639R G639R
640 13.2 P640A
641 13.7
642 14.2
643 14.7