S616T Summary

SCN5A S616T was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. S616T is not present in gnomAD. S616T has been functionally characterized in 0 papers. Other variants at the same resdue are S616C .S616G .S616I .S616N .S616R .S616R .S616R .S616T . This residue is located in a Non_Hotspot region for BrS1 and in a Mild_Hotspot region for Long QT syndrome.

S616T Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

SIFT Sift Score PROVEAN Score Polyphen2 Polyphen2 Score eaRate blastPssm pamScore REVEL
NA NA NA NA NA NA NA NA 0.445

S616T has 30 neighbors within 15 ångströms that have been found in individuals.

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.

ResidueNumber Distance(Å) Variants
601 14.7
602 14.2
603 13.7
604 13.2 L604V
605 12.6
606 12
607 11.4 G607V
608 10.7 D608N
609 10.1
610 9.3
611 8.5
612 7.6
613 6.6
614 5.4
615 3.8 G615E
617 3.8
618 5.4 L618F
619 6.6 L619F
620 7.6 R620C R620H
621 8.5
622 9.3
623 10.1
624 10.7 L624Q
625 11.4 E625D E625D
626 12
627 12.6 P627L
628 13.2
629 13.7
630 14.2 T630M
631 14.7