T486N Summary

SCN5A T486N was found in 0 papers (see below) with a total of 0 carriers: 0 had BrS1, 0 had LQT3, and 0 had other disease. T486N is not present in gnomAD. T486N has been functionally characterized in 0 papers. Other variants at the same resdue are T486A .T486I .T486N .T486P .T486S .T486S . This residue is located in a Non_Hotspot region for BrS1 and in a Non_Hotspot region for Long QT syndrome.

T486N Predictions

PROVEAN scores less than -2 are considered deleterious. REVEL scores higher than 0.5 or 0.75 is considered likely pathogenic (higher sensitivity with the former cutoff, higher specificity with the latter cutoff). A PolyPhen-2 score of 0.85 or greater is considered likely pathogenic. PAM scores reflect the chemistry difference between WT and variant amino acid (more negative being greater difference between the two). BLAST-PSSM reflects the evolutionary conservation of residue substitutions, more negative numbers indicate fewer observations of the specific substitution than is expected.

SIFT Sift Score PROVEAN Score Polyphen2 Polyphen2 Score eaRate blastPssm pamScore REVEL
NA NA NA NA NA NA NA NA 0.162

T486N has 30 neighbors within 15 ångströms that have been found in individuals.

A residue within a folded protein on average has nearest neighbors that fall roughly into two shells: a "nearest" neighbor around 5-6 angstroms and a second shell around 11 angstroms.

ResidueNumber Distance(Å) Variants
471 14.7
472 14.2
473 13.7
474 13.2 R474K
475 12.6 R475K R475S R475S
476 12
477 11.4
478 10.7
479 10.1
480 9.3 K480N K480N
481 8.5 R481Q R481W
482 7.6
483 6.6
484 5.4
485 3.8
487 3.8
488 5.4
489 6.6
490 7.6
491 8.5
492 9.3
493 10.1 R493K
494 10.7
495 11.4
496 12
497 12.6
498 13.2
499 13.7
500 14.2
501 14.7